exportBindSequence {ChIPseqR} | R Documentation |
Extracts sequence of predicted binding sites from reference genome and exports them in FASTA format.
exportBindSequence(prediction, reference, bind, overlap = FALSE, file = "")
prediction |
Object of class |
reference |
Reference genome sequence (as |
bind |
Length of binding site to assume for sequence extraction. This may be missing in which case the value is
derived from |
overlap |
Logical indicating whether overlapping predictions should be allowed. |
file |
Name of output file. |
An XStringViews
object containing the sequences. If a file name is provided this is returned
invisibly.
Peter Humburg
Package Biostrings
XStringViews
, XStringSet
, BindScore