SelectReferenceSetByKmeans {CNVPanelizer} | R Documentation |
Select a reference set using Kmeans
SelectReferenceSetByKmeans(allSamplesReadCounts, normalizationMethod = "tmm", referenceNumberOfElements)
allSamplesReadCounts |
All samples read counts matrix |
normalizationMethod |
tmm (trimmed mean of m values) or tss (total sum scaling) |
referenceNumberOfElements |
Number of elements to select for the reference set |
Returns a list of sample identifiers to be used as reference
Cristiano Oliveira
SelectReferenceSetByKmeans(allSamplesReadCounts, normalizationMethod = "tmm", referenceNumberOfElements)