NormalizeCounts {CNVPanelizer} | R Documentation |
This function normalize counts use of Total sum scaling or NOISeq::tmm to normalize the read counts
NormalizeCounts(allCounts, method)
allCounts |
Matrix or vector with sample read counts (rows: amplicons, columns: samples) |
method |
either "tmm" (trimmed mean of m values) or "tss"(total sum scaling) |
A matrice
samples |
The samples matrix normalized |
Cristiano Oliveira, Thomas Wolf
data(sampleReadCounts) normalizedReadCounts <- NormalizeCounts(sampleReadCounts)