importExpressions {CHRONOS} | R Documentation |
Import gene and miRNA expressions from
importExpressions(data, type, sep, org, mRNAnomenclature)
data |
Expressions data filename or matrix. |
type |
Expressions data type. (or mRNA expressions, type=<nomenType>.
Availiable gene expression nomenclature can be found in
|
sep |
File delimiter. |
org |
KEGG organism identifier |
mRNAnomenclature |
Nomenclature of user's mRNA expressions |
Import gene expressions data from CHRONOS/extdata/Input/<userFile>.txt or a supplied matrix.
Import miRNA expressions data from CHRONOS/extdata/Input/<userFile>.txt or a supplied matrix.
.
# Example load(system.file('extdata', 'Examples//data.RData', package='CHRONOS')) importExpressions(data=mRNAexpr, type='mRNA', mRNAnomenclature='entrezgene', sep='\t', org='hsa') importExpressions(data=miRNAexpr, type='miRNA', sep='\t', org='hsa')