Recon2 {BiGGR} | R Documentation |
The dataset was generated by downloading the SBML file of the
reconstruction (http://www.ebi.ac.uk/biomodels-main/MODEL1109130000) which was subsequently converted
into an object of class SBML
using the rsbml_read
function
from the rsbml
package.
data(Recon2)
An sbml object of class rsbml
http://www.ebi.ac.uk/biomodels-main/MODEL1109130000
Thiele I, Swainston N, et al.,"A community-driven global reconstruction of human metabolism", Nature Biotechnology 31, 419-425 (2013), doi:10.1038/nbt.2488
## Not run: ##The dataset was generated as follows: ##MODEL1109130000.xml was downloaded from http://www.ebi.ac.uk/biomodels-main/MODEL1109130000 ##Recon2 <- rsbml_read("MODEL1109130000.xml") ## End(Not run) ##load data and get all reaction IDs data(Recon2) model <- Recon2@model ##get all reaction identifiers sapply(model@reactions, id)