setTranscriptomeFromObject {BgeeCall} | R Documentation |
Method of the class UserMetadata. Set transcriptome_object of one UserMetadata object by using one DNAStringSet object as input.
setTranscriptomeFromObject(userObject, transcriptomeObject, transcriptomeName) ## S4 method for signature 'UserMetadata,DNAStringSet,character' setTranscriptomeFromObject(userObject, transcriptomeObject, transcriptomeName)
userObject |
UserMetadata object |
transcriptomeObject |
Object of the DNAStringSet S4 class |
transcriptomeName |
Name of the transcriptome. Will be used to create transcriptome folders. |
Please use a DNAStringSet object as input. This class is defined in the Biostrings package
an object of UserMetadata
{ user <- new("UserMetadata") transcriptome_object <- Biostrings::readDNAStringSet( system.file("extdata", "transcriptome.fa", package = "BgeeCall")) user <- setTranscriptomeFromObject(user, transcriptome_object, "transcriptome_name") }