clusterPlot {BayesSpace} | R Documentation |
Plot spatial cluster assignments.
clusterPlot( sce, label = "spatial.cluster", palette = NULL, color = NULL, platform = NULL, is.enhanced = NULL, ... )
sce |
SingleCellExperiment. If |
label |
Labels used to color each spot. May be the name of a column in
|
palette |
Optional vector of hex codes to use for discrete spot values. |
color |
Optional hex code to set color of borders around spots. Set to
|
platform |
Spatial sequencing platform. If "Visium", the hex spot layout
will be used, otherwise square spots will be plotted. |
is.enhanced |
True if |
... |
Additional arguments for |
Returns a ggplot object.
Other spatial plotting functions:
featurePlot()
sce <- exampleSCE() clusterPlot(sce)