giveEnzymeSequence {Basic4Cseq} | R Documentation |
This function is a small convenience function that reads in a prepared file with restriction enzyme sequence names and sequences. giveEnzymeSequence
then provides restriction enzyme sequences for the example enzymes listed in van de Werken et al's 4Cseqpipe data base.
giveEnzymeSequence(fileNameDatabase, enzymeName)
fileNameDatabase |
File name of the prepared enzyme database |
enzymeName |
Name of the enzyme for which the sequence is to be returned |
Character string with the restriction enzyme sequence
For any custom-made enzyme list it is assumed that there are no duplicate enzyme names in the database.
Carolin Walter
van de Werken, H., Landan, G., Holwerda, S., et al. (2012): Robust 4C-seq data analysis to screen for regulatory DNA interactions, Nature Methods, 9, 969-971.
file <- system.file("extdata", "enzymeData.csv", package="Basic4Cseq") giveEnzymeSequence(file, "NlaIII")