plot_cluster_profiles {BPRMeth} | R Documentation |
Function for plotting the clusterd methylation profiles across a given region where each colour denotes a different cluster.
plot_cluster_profiles( cluster_obj, title = "Clustered profiles", x_axis = "genomic region", y_axis = "met level", x_labels = c("Upstream", "", "Centre", "", "Downstream"), ... )
cluster_obj |
Clustered profiles object, i.e. output from
|
title |
Plot title |
x_axis |
x axis label |
y_axis |
x axis label |
x_labels |
x axis ticks labels |
... |
Additional parameters |
A ggplot2 object.
C.A.Kapourani C.A.Kapourani@ed.ac.uk
plot_infer_profiles
,
plot_predicted_expr
, boxplot_cluster_expr
# Cluster methylation profiles using 3 RBFs basis <- create_rbf_object(M = 3) # Perform clustering cl_obj <- cluster_profiles_vb(X = encode_met$met, K = 3, model = "binomial", basis = basis, vb_max_iter = 5) # Create plot g <- plot_cluster_profiles(cluster_obj = cl_obj)