BASiCS_DenoisedRates {BASiCS} | R Documentation |
Calculates normalised and denoised expression rates, by removing the effect of technical variation.
BASiCS_DenoisedRates(Data, Chain, Propensities = FALSE)
Data |
an object of class |
Chain |
an object of class |
Propensities |
If |
See vignette
A matrix of denoised expression rates (biological genes only)
Catalina A. Vallejos cnvallej@uc.cl
Nils Eling eling@ebi.ac.uk
Data <- makeExampleBASiCS_Data(WithSpikes = TRUE) ## The N and Burn parameters used here are optimised for speed ## and should not be used in regular use. ## For more useful parameters, ## see the vignette (\code{browseVignettes("BASiCS")}) Chain <- BASiCS_MCMC(Data, N = 1000, Thin = 10, Burn = 500, Regression = FALSE, PrintProgress = FALSE) DR <- BASiCS_DenoisedRates(Data, Chain)