AMARETTO_Run {AMARETTO}R Documentation

AMARETTO_Run Function to run AMARETTO, a statistical algorithm to identify cancer drivers by integrating a variety of omics data from cancer and normal tissue.

Description

AMARETTO_Run Function to run AMARETTO, a statistical algorithm to identify cancer drivers by integrating a variety of omics data from cancer and normal tissue.

Usage

AMARETTO_Run(AMARETTOinit)

Arguments

AMARETTOinit

List output from AMARETTO_Initialize().

Value

result

Examples

data('ProcessedDataLIHC')
AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,
                                    NrModules = 2, VarPercentage = 50)
AMARETTOresults <- AMARETTO_Run(AMARETTOinit)

[Package AMARETTO version 1.8.0 Index]