AMARETTO_EvaluateTestSet {AMARETTO} | R Documentation |
Code to evaluate AMARETTO on a new gene expression test set. Uses output from AMARETTO_Run() and CreateRegulatorData().
AMARETTO_EvaluateTestSet(AMARETTOresults = AMARETTOresults, MA_Data_TestSet = MA_Data_TestSet, RegulatorData_TestSet = RegulatorData_TestSet)
AMARETTOresults |
AMARETTO output from AMARETTO_Run(). |
MA_Data_TestSet |
Gene expression matrix from a test set (that was not used in AMARETTO_Run()). |
RegulatorData_TestSet |
Test regulator data from CreateRegulatorData(). |
result
data('ProcessedDataLIHC') AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC, NrModules = 2, VarPercentage = 50) AMARETTOresults <- AMARETTO_Run(AMARETTOinit) AMARETTOtestReport <- AMARETTO_EvaluateTestSet(AMARETTOresults = AMARETTOresults, MA_Data_TestSet = AMARETTOinit$MA_matrix_Var, RegulatorData_TestSet = AMARETTOinit$RegulatorData)