greengenes13.5MgDb

DOI: 10.18129/B9.bioc.greengenes13.5MgDb    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see greengenes13.5MgDb.

Greengenes 13.5 16S rRNA Database Annotation Data

Bioconductor version: 3.12

Metagenome annotation package with for the Greengenes 16S rRNA Database version 13.5. Contains a MgDb-class object, defined in the metagenomeFeatures package.

Author: Nathan D. Olson <nolson at umias.umd.edu>, Joseph Nathaniel Paulson, Hector Corrada-Bravo

Maintainer: Nathan D. Olson <nolson at umiacs.umd.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("greengenes13.5MgDb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationData, Microbiome
Version	2.0.0
License	Artistic-2.0
Depends	R (>= 3.4.0), methods
Imports	metagenomeFeatures(>= 1.9.9)
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SystemRequirements
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URL	https://github.com/HCBravoLab/greengenes13.5MgDb
BugReports	https://github.com/HCBravoLab/greengenes13.5MgDb/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	greengenes13.5MgDb_2.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url	https://bioconductor.org/packages/greengenes13.5MgDb/
Package Downloads Report	Download Stats