scp

DOI: 10.18129/B9.bioc.scp    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see scp.

Mass Spectrometry-Based Single-Cell Proteomics Data Analysis

Bioconductor version: 3.12

Utility functions for manipulating, processing, and analyzing mass spectrometry-based single-cell proteomics (SCP) data. The package is an extension to the 'QFeatures' package designed for SCP applications.

Author: Christophe Vanderaa [aut, cre] , Laurent Gatto [aut]

Maintainer: Christophe Vanderaa <christophe.vanderaa at uclouvain.be>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scp")

 

HTML	R Script	Single Cell Proteomics data processing and analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, GeneExpression, MassSpectrometry, Preprocessing, Proteomics, SingleCell, Software
Version	1.0.0
In Bioconductor since	BioC 3.12 (R-4.0) (0.5 years)
License	Artistic-2.0
Depends	R (>= 4.0), QFeatures
Imports	methods, stats, utils, SingleCellExperiment, SummarizedExperiment, MultiAssayExperiment, S4Vectors, dplyr, magrittr, rlang
LinkingTo
Suggests	testthat, knitr, BiocStyle, rmarkdown, patchwork, ggplot2, matrixStats, impute, scater, sva, uwot
SystemRequirements
Enhances
URL	https://UCLouvain-CBIO.github.io/scp
BugReports	https://github.com/UCLouvain-CBIO/scp/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scp_1.0.0.tar.gz
Windows Binary	scp_1.0.0.zip
macOS 10.13 (High Sierra)	scp_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/scp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scp
Package Short Url	https://bioconductor.org/packages/scp/
Package Downloads Report	Download Stats