rTRMui

DOI: 10.18129/B9.bioc.rTRMui    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see rTRMui.

A shiny user interface for rTRM

Bioconductor version: 3.12

This package provides a web interface to compute transcriptional regulatory modules with rTRM.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rTRMui")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRMui")

 

PDF	R Script	Introduction to rTRMui
PDF		Reference Manual
Text		NEWS

Details

biocViews	GUI, GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version	1.28.0
In Bioconductor since	BioC 2.13 (R-3.0) (7.5 years)
License	GPL-3
Depends
Imports	shiny (>= 0.9), rTRM, MotifDb, org.Hs.eg.db, org.Mm.eg.db
LinkingTo
Suggests
SystemRequirements
Enhances
URL	https://github.com/ddiez/rTRMui
BugReports	https://github.com/ddiez/rTRMui/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rTRMui_1.28.0.tar.gz
Windows Binary	rTRMui_1.28.0.zip
macOS 10.13 (High Sierra)	rTRMui_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rTRMui
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rTRMui
Package Short Url	https://bioconductor.org/packages/rTRMui/
Package Downloads Report	Download Stats