iCOBRA

DOI: 10.18129/B9.bioc.iCOBRA    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see iCOBRA.

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: 3.12

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. It also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iCOBRA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCOBRA")

 

HTML	R Script	iCOBRA User Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, Software
Version	1.18.1
In Bioconductor since	BioC 3.3 (R-3.3) (5 years)
License	GPL (>=2)
Depends	R (>= 3.4)
Imports	shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2 (>= 2.0.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR
LinkingTo
Suggests	knitr, testthat, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/markrobinsonuzh/iCOBRA
BugReports	https://github.com/markrobinsonuzh/iCOBRA/issues
Depends On Me
Imports Me
Suggests Me	muscat, SummarizedBenchmark
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iCOBRA_1.18.1.tar.gz
Windows Binary	iCOBRA_1.18.1.zip
macOS 10.13 (High Sierra)	iCOBRA_1.18.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iCOBRA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iCOBRA
Package Short Url	https://bioconductor.org/packages/iCOBRA/
Package Downloads Report	Download Stats