flowFit

DOI: 10.18129/B9.bioc.flowFit    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see flowFitExampleData.

Estimate proliferation in cell-tracking dye studies

Bioconductor version: 3.12

This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

Author: Davide Rambaldi

Maintainer: Davide Rambaldi <davide.rambaldi at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowFit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version	1.28.0
In Bioconductor since	BioC 2.13 (R-3.0) (7.5 years)
License	Artistic-2.0
Depends	R (>= 2.12.2)
Imports	flowCore, flowViz, graphics, kza, methods, minpack.lm, gplots
LinkingTo
Suggests	flowFitExampleData
SystemRequirements
Enhances
URL
BugReports	Davide Rambaldi
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/flowFit
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowFit
Package Short Url	https://bioconductor.org/packages/flowFit/
Package Downloads Report	Download Stats