bluster

DOI: 10.18129/B9.bioc.bluster    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see bluster.

Clustering Algorithms for Bioconductor

Bioconductor version: 3.12

Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bluster")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bluster")

 

HTML	R Script	1. Clustering algorithms
HTML	R Script	2. Clustering diagnostics
PDF		Reference Manual

Details

biocViews	Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics
Version	1.0.0
In Bioconductor since	BioC 3.12 (R-4.0) (0.5 years)
License	GPL-3
Depends
Imports	stats, methods, utils, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors
LinkingTo	Rcpp
Suggests	knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis
SystemRequirements	C++11
Enhances
URL
Depends On Me
Imports Me	mbkmeans, scDblFinder, scran
Suggests Me	batchelor, scDblFinder
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bluster_1.0.0.tar.gz
Windows Binary	bluster_1.0.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	bluster_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bluster
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bluster
Package Short Url	https://bioconductor.org/packages/bluster/
Package Downloads Report	Download Stats