StarBioTrek

DOI: 10.18129/B9.bioc.StarBioTrek    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see StarBioTrek.

StarBioTrek

Bioconductor version: 3.12

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Author: Claudia Cava, Isabella Castiglioni

Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("StarBioTrek")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("StarBioTrek")

 

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneRegulation, KEGG, Network, Pathways, Software
Version	1.16.0
In Bioconductor since	BioC 3.4 (R-3.3) (4.5 years)
License	GPL (>= 3)
Depends	R (>= 3.3)
Imports	SpidermiR, graphite, AnnotationDbi, e1071, ROCR, MLmetrics, grDevices, igraph, reshape2, ggplot2
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid
SystemRequirements
Enhances
URL	https://github.com/claudiacava/StarBioTrek
BugReports	https://github.com/claudiacava/StarBioTrek/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	StarBioTrek_1.16.0.tar.gz
Windows Binary	StarBioTrek_1.16.0.zip
macOS 10.13 (High Sierra)	StarBioTrek_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/StarBioTrek
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/StarBioTrek
Package Short Url	https://bioconductor.org/packages/StarBioTrek/
Package Downloads Report	Download Stats