OTUbase

DOI: 10.18129/B9.bioc.OTUbase    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see OTUbase.

Provides structure and functions for the analysis of OTU data

Bioconductor version: 3.12

Provides a platform for Operational Taxonomic Unit based analysis

Author: Daniel Beck, Matt Settles, and James A. Foster

Maintainer: Daniel Beck <danlbek at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OTUbase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OTUbase")

 

PDF	R Script	An introduction to OTUbase
PDF		Reference Manual

Details

biocViews	DataImport, Sequencing, Software
Version	1.40.0
In Bioconductor since	BioC 2.7 (R-2.12) (10.5 years)
License	Artistic-2.0
Depends	R (>= 2.9.0), methods, S4Vectors, IRanges, ShortRead(>= 1.23.15), Biobase, vegan
Imports	Biostrings
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	mcaGUI
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OTUbase_1.40.0.tar.gz
Windows Binary	OTUbase_1.40.0.zip
macOS 10.13 (High Sierra)	OTUbase_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OTUbase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OTUbase
Package Short Url	https://bioconductor.org/packages/OTUbase/
Package Downloads Report	Download Stats