Herper

DOI: 10.18129/B9.bioc.Herper    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see Herper.

The Herper package is a simple toolset to install and manage conda packages and environments from R

Bioconductor version: 3.12

Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.

Author: Matt Paul [aut] , Thomas Carroll [aut, cre] , Doug Barrows [aut], Kathryn Rozen-Gagnon [ctb]

Maintainer: Thomas Carroll <tc.infomatics at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Herper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Herper")

 

HTML	R Script	Herper
HTML	R Script	Quick Start
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.0.2
In Bioconductor since	BioC 3.12 (R-4.0) (0.5 years)
License	GPL-3
Depends	R (>= 4.0), reticulate
Imports	utils, rjson, withr, stats
LinkingTo
Suggests	BiocStyle, testthat, knitr, rmarkdown, seqCNA
SystemRequirements
Enhances
URL	https://github.com/RockefellerUniversity/Herper
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Herper_1.0.2.tar.gz
Windows Binary	Herper_1.0.2.zip
macOS 10.13 (High Sierra)	Herper_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Herper
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Herper
Package Short Url	https://bioconductor.org/packages/Herper/
Package Downloads Report	Download Stats