GA4GHshiny

DOI: 10.18129/B9.bioc.GA4GHshiny    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see GA4GHshiny.

Shiny application for interacting with GA4GH-based data servers

Bioconductor version: 3.12

GA4GHshiny package provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb], Elizabeth Borgognoni [ctb]

Maintainer: Welliton Souza <well309 at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GA4GHshiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GA4GHshiny")

 

HTML	R Script	GA4GHshiny
PDF		Reference Manual

Details

biocViews	GUI, Software
Version	1.12.0
In Bioconductor since	BioC 3.6 (R-3.4) (3.5 years)
License	GPL-3
Depends	GA4GHclient
Imports	AnnotationDbi, BiocGenerics, dplyr, DT, GenomeInfoDb, openxlsx, GenomicFeatures, methods, purrr, S4Vectors, shiny, shinyjs, tidyr, shinythemes
LinkingTo
Suggests	BiocStyle, org.Hs.eg.db, knitr, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL	https://github.com/labbcb/GA4GHshiny
BugReports	https://github.com/labbcb/GA4GHshiny/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GA4GHshiny_1.12.0.tar.gz
Windows Binary	GA4GHshiny_1.12.0.zip
macOS 10.13 (High Sierra)	GA4GHshiny_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GA4GHshiny
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GA4GHshiny
Package Short Url	https://bioconductor.org/packages/GA4GHshiny/
Package Downloads Report	Download Stats