Clonality

DOI: 10.18129/B9.bioc.Clonality    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see Clonality.

Clonality testing

Bioconductor version: 3.12

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Author: Irina Ostrovnaya

Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Clonality")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Clonality")

 

PDF	R Script	Clonality
PDF		Reference Manual

Details

biocViews	Classification, CopyNumber, Diagnosis, Mutations, Software, aCGH, metastasis
Version	1.38.0
In Bioconductor since	BioC 2.8 (R-2.13) (10 years)
License	GPL-3
Depends	R (>= 2.12.2), DNAcopy
Imports	grDevices, graphics, stats, utils
LinkingTo
Suggests	gdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Clonality_1.38.0.tar.gz
Windows Binary	Clonality_1.38.0.zip
macOS 10.13 (High Sierra)	Clonality_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Clonality
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Clonality
Package Short Url	https://bioconductor.org/packages/Clonality/
Package Downloads Report	Download Stats