CAMERA

DOI: 10.18129/B9.bioc.CAMERA    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see CAMERA.

Collection of annotation related methods for mass spectrometry data

Bioconductor version: 3.12

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CAMERA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAMERA")

 

PDF		Atom count expectations with compoundQuantiles
PDF		Isotope pattern validation with CAMERA
PDF	R Script	Molecule Identification with CAMERA
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version	1.46.0
In Bioconductor since	BioC 2.4 (R-2.9) (12 years)
License	GPL (>= 2)
Depends	R (>= 2.1.0), methods, Biobase, xcms(>= 1.13.5)
Imports	methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph
LinkingTo
Suggests	faahKO, RUnit, BiocGenerics
SystemRequirements
Enhances	Rmpi, snow
URL	http://msbi.ipb-halle.de/msbi/CAMERA/
BugReports	https://github.com/sneumann/CAMERA/issues/new
Depends On Me	flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids
Imports Me
Suggests Me	cliqueMS, msPurity, mtbls2, RMassBank
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CAMERA_1.46.0.tar.gz
Windows Binary	CAMERA_1.46.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	CAMERA_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CAMERA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CAMERA
Package Short Url	https://bioconductor.org/packages/CAMERA/
Package Downloads Report	Download Stats