BiocSet

DOI: 10.18129/B9.bioc.BiocSet    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see BiocSet.

Representing Different Biological Sets

Bioconductor version: 3.12

BiocSet displays different biological sets in a triple tibble format. These three tibbles are `element`, `set`, and `elementset`. The user has the abilty to activate one of these three tibbles to perform common functions from the dplyr package. Mapping functionality and accessing web references for elements/sets are also available in BiocSet.

Author: Kayla Morrell [aut, cre], Martin Morgan [aut], Kevin Rue-Albrecht [ctb], Lluís Revilla Sancho [ctb]

Maintainer: Kayla Morrell <kayla.morrell at roswellpark.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocSet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocSet")

 

HTML	R Script	BiocSet: Representing Element Sets in the Tidyverse
PDF		Reference Manual
Text		NEWS

Details

biocViews	GO, GeneExpression, KEGG, Software
Version	1.4.0
In Bioconductor since	BioC 3.10 (R-3.6) (1.5 years)
License	Artistic-2.0
Depends	R (>= 3.6), dplyr
Imports	methods, tibble, utils, rlang, plyr, S4Vectors, BiocIO, AnnotationDbi, KEGGREST, ontologyIndex, tidyr
LinkingTo
Suggests	GSEABase, airway, org.Hs.eg.db, DESeq2, limma, BiocFileCache, GO.db, testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me	RegEnrich
Imports Me
Suggests Me	dearseq
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BiocSet_1.4.0.tar.gz
Windows Binary	BiocSet_1.4.0.zip
macOS 10.13 (High Sierra)	BiocSet_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BiocSet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocSet
Package Short Url	https://bioconductor.org/packages/BiocSet/
Package Downloads Report	Download Stats