AnnotationFilter

DOI: 10.18129/B9.bioc.AnnotationFilter    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see AnnotationFilter.

Facilities for Filtering Bioconductor Annotation Resources

Bioconductor version: 3.12

This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.

Author: Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnnotationFilter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationFilter")

 

HTML	R Script	Facilities for Filtering Bioconductor Annotation resources
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Infrastructure, Software
Version	1.14.0
In Bioconductor since	BioC 3.5 (R-3.4) (4 years)
License	Artistic-2.0
Depends	R (>= 3.4.0)
Imports	utils, methods, GenomicRanges, lazyeval
LinkingTo
Suggests	BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db
SystemRequirements
Enhances
URL	https://github.com/Bioconductor/AnnotationFilter
BugReports	https://github.com/Bioconductor/AnnotationFilter/issues
Depends On Me	chimeraviz, ensembldb, Organism.dplyr
Imports Me	biovizBase, BUSpaRse, ggbio, QFeatures, TVTB
Suggests Me	TFutils, TxRegInfra, wiggleplotr
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AnnotationFilter_1.14.0.tar.gz
Windows Binary	AnnotationFilter_1.14.0.zip
macOS 10.13 (High Sierra)	AnnotationFilter_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AnnotationFilter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AnnotationFilter
Package Short Url	https://bioconductor.org/packages/AnnotationFilter/
Package Downloads Report	Download Stats