zebrafishRNASeq

DOI: 10.18129/B9.bioc.zebrafishRNASeq    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see zebrafishRNASeq.

Zebrafish RNA-Seq Experimental Data from Ferreira et al. (2014)

Bioconductor version: 3.11

Gene-level read counts from RNA-Seq for gallein-treated and control zebrafish.

Author: Davide Risso

Maintainer: Davide Risso <risso.davide at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("zebrafishRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("zebrafishRNASeq")

 

PDF	R Script	Pre-Processing for the Zebrafish RNA-Seq Gene-Level Counts
PDF		Reference Manual

Details

biocViews	Danio_rerio_Data, ExperimentData, RNASeqData
Version	1.8.0
License	GPL
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests	BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	RUVSeq, sva
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	zebrafishRNASeq_1.8.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/zebrafishRNASeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/zebrafishRNASeq
Package Short Url	https://bioconductor.org/packages/zebrafishRNASeq/
Package Downloads Report	Download Stats