benchmarkfdrData2019

DOI: 10.18129/B9.bioc.benchmarkfdrData2019    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see benchmarkfdrData2019.

Data and Benchmarking Results from Korthauer and Kimes et al. (2019)

Bioconductor version: 3.11

Benchmarking results for experimental and simulated data sets used in Korthauer and Kimes et al. (2019) to compare methods for controlling the false discovery rate.

Author: Stephanie Hicks [aut, cre] , Keegan Korthauer [aut] , Patrick Kimes [aut]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("benchmarkfdrData2019")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("benchmarkfdrData2019")

 

HTML	R Script	Exploring and updating FDR benchmarking results
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData
Version	1.2.0
License	MIT + file LICENSE
Depends	R (>= 3.6.0), SummarizedExperiment, ExperimentHub
Imports	utils
LinkingTo
Suggests	knitr, BiocStyle, testthat, SummarizedBenchmark, dplyr, ggplot2, rlang
SystemRequirements
Enhances
URL
BugReports	https://github.com/stephaniehicks/benchmarkfdrData2019/issues
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	benchmarkfdrData2019_1.2.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/benchmarkfdrData2019
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/benchmarkfdrData2019
Package Short Url	https://bioconductor.org/packages/benchmarkfdrData2019/
Package Downloads Report	Download Stats