HGNC gene symbols in rows, pathways in columns. Pathway activity inference works by matrix multiplication of gene expression with the model.
The full human model contains 22479 genes, associated pathways, weight and the p-value.
gene names in HGNC symbols
names of PROGENy pathways
z-scores for a given gene
significance of gene in pathway
https://www.nature.com/articles/s41467-017-02391-6
get("model_human_full", envir = .GlobalEnv)