pwrEWAS

DOI: 10.18129/B9.bioc.pwrEWAS    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see pwrEWAS.

A user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)

Bioconductor version: 3.11

pwrEWAS is a user-friendly tool to assists researchers in the design and planning of EWAS to help circumvent under- and overpowered studies.

Author: Stefan Graw

Maintainer: Stefan Graw <shgraw at uams.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pwrEWAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pwrEWAS")

 

PDF	R Script	pwrEWAS User's Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, DifferentialMethylation, Microarray, Software, TissueMicroarray
Version	1.2.0
In Bioconductor since	BioC 3.10 (R-3.6) (1 year)
License	Artistic-2.0
Depends	shinyBS, foreach
Imports	doParallel, abind, truncnorm, CpGassoc, shiny, ggplot2, parallel, shinyWidgets, BiocManager, doSNOW, limma, genefilter, stats, grDevices, methods, utils, graphics, pwrEWAS.data
LinkingTo
Suggests	knitr, RUnit, BiocGenerics, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pwrEWAS_1.2.0.tar.gz
Windows Binary	pwrEWAS_1.2.0.zip
macOS 10.13 (High Sierra)	pwrEWAS_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pwrEWAS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pwrEWAS
Package Short Url	https://bioconductor.org/packages/pwrEWAS/
Package Downloads Report	Download Stats