motifRG

DOI: 10.18129/B9.bioc.motifRG    

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see motifRG.

A package for discriminative motif discovery, designed for high throughput sequencing dataset

Bioconductor version: 3.11

Tools for discriminative motif discovery using regression methods

Author: Zizhen Yao

Maintainer: Zizhen Yao <yzizhen at fhcrc.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("motifRG")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifRG")

 

PDF	R Script	motifRG: regression-based discriminative motif discovery
PDF		Reference Manual

Details

biocViews	MotifDiscovery, Software, Transcription
Version	1.31.0
In Bioconductor since	BioC 2.10 (R-2.15) (8.5 years)
License	Artistic-2.0
Depends	R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19
Imports	Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	motifRG_1.31.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/motifRG
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/motifRG
Package Short Url	https://bioconductor.org/packages/motifRG/
Package Downloads Report	Download Stats