manta

DOI: 10.18129/B9.bioc.manta    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see manta.

Microbial Assemblage Normalized Transcript Analysis

Bioconductor version: 3.11

Tools for robust comparative metatranscriptomics.

Author: Ginger Armbrust, Adrian Marchetti

Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("manta")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DataImport, DifferentialExpression, GeneExpression, Genetics, ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Visualization
Version	1.34.0
In Bioconductor since	BioC 2.10 (R-2.15) (8.5 years)
License	Artistic-2.0
Depends	R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports	Hmisc, caroline (>= 0.6.6)
LinkingTo
Suggests	RSQLite, plotrix
SystemRequirements
Enhances
URL	http://manta.ocean.washington.edu/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/manta
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/manta
Package Short Url	https://bioconductor.org/packages/manta/
Package Downloads Report	Download Stats