ExploreModelMatrix

DOI: 10.18129/B9.bioc.ExploreModelMatrix    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see ExploreModelMatrix.

Graphical Exploration of Design Matrices

Bioconductor version: 3.11

Given a sample data table and a design formula, generate an interactive application to explore the resulting design matrix.

Author: Charlotte Soneson [aut, cre] , Federico Marini [aut] , Michael Love [aut] , Florian Geier [aut] , Michael Stadler [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExploreModelMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExploreModelMatrix")

 

HTML	R Script	ExploreModelMatrix
HTML	R Script	ExploreModelMatrix-deploy
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DifferentialExpression, ExperimentalDesign, Regression, Software
Version	1.0.2
In Bioconductor since	BioC 3.11 (R-4.0) (0.5 years)
License	MIT + file LICENSE
Depends
Imports	shiny, shinydashboard, DT, cowplot, utils, dplyr, magrittr, tidyr, ggplot2, stats, methods, rintrojs, scales, tibble, MASS, limma, S4Vectors
LinkingTo
Suggests	testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/csoneson/ExploreModelMatrix
BugReports	https://github.com/csoneson/ExploreModelMatrix/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ExploreModelMatrix_1.0.2.tar.gz
Windows Binary	ExploreModelMatrix_1.0.2.zip
macOS 10.13 (High Sierra)	ExploreModelMatrix_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ExploreModelMatrix
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ExploreModelMatrix
Package Short Url	https://bioconductor.org/packages/ExploreModelMatrix/
Package Downloads Report	Download Stats