DelayedMatrixStats

DOI: 10.18129/B9.bioc.DelayedMatrixStats    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see DelayedMatrixStats.

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Bioconductor version: 3.11

A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

Author: Peter Hickey <peter.hickey at gmail.com>

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DelayedMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DelayedMatrixStats")

 

HTML	R Script	Overview of DelayedMatrixStats
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	1.10.1
In Bioconductor since	BioC 3.6 (R-3.4) (3 years)
License	MIT + file LICENSE
Depends	DelayedArray(>= 0.14.0)
Imports	methods, matrixStats (>= 0.56.0), Matrix, S4Vectors(>= 0.17.5), IRanges, HDF5Array(>= 1.16.1), BiocParallel
LinkingTo
Suggests	testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark, profmem
SystemRequirements
Enhances
URL	https://github.com/PeteHaitch/DelayedMatrixStats
BugReports	https://github.com/PeteHaitch/DelayedMatrixStats/issues
Depends On Me
Imports Me	batchelor, biscuiteer, bsseq, dmrseq, FRASER, glmGamPoi, methrix, methylSig, minfi, PCAtools, scater, scMerge, scran, SingleR, weitrix
Suggests Me	DelayedArray, mbkmeans
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DelayedMatrixStats_1.10.1.tar.gz
Windows Binary	DelayedMatrixStats_1.10.1.zip
macOS 10.13 (High Sierra)	DelayedMatrixStats_1.10.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DelayedMatrixStats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DelayedMatrixStats
Package Short Url	https://bioconductor.org/packages/DelayedMatrixStats/
Package Downloads Report	Download Stats