write_homer {universalmotif} | R Documentation |
Convert DNA motifs to HOMER format and write to file. See http://homer.ucsd.edu/homer/motif/.
write_homer(motifs, file, logodds_threshold = 0.6, overwrite = FALSE, append = FALSE)
motifs |
See |
file |
|
logodds_threshold |
|
overwrite |
|
append |
|
NULL, invisibly.
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
Heinz S, Benner C, Spann N, Bertolino E, Lin Y, Laslo P, Cheng J, Murre C, Singh H, Glass C (2010). “Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.” Molecular Cell, 38, 576-589.
Other write_motifs:
write_jaspar()
,
write_matrix()
,
write_meme()
,
write_motifs()
,
write_transfac()
motif <- create_motif() write_homer(motif, tempfile())