read_jaspar {universalmotif} | R Documentation |
Import JASPAR formatted motifs. See http://jaspar.genereg.net/. Can be either DNA, RNA, or AA motifs.
read_jaspar(file, skip = 0)
file |
|
skip |
|
list
universalmotif objects.
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon J, van der Lee R, Bessy A, Cheneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas D, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman W, Parcy F, Mathelier A (2018). “JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.” Nucleic Acids Research, 46, D260-D266.
Other read_motifs:
read_cisbp()
,
read_homer()
,
read_matrix()
,
read_meme()
,
read_motifs()
,
read_transfac()
,
read_uniprobe()
jaspar <- read_jaspar(system.file("extdata", "jaspar.txt", package = "universalmotif"))