read_matrix {universalmotif} | R Documentation |
Import simply formatted motifs.
read_matrix(file, skip = 0, type, positions = "columns", alphabet = "DNA", sep = "", headers = TRUE, rownames = FALSE)
file |
|
skip |
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type |
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positions |
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alphabet |
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sep |
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headers |
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rownames |
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list
universalmotif objects.
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
Other read_motifs:
read_cisbp()
,
read_homer()
,
read_jaspar()
,
read_meme()
,
read_motifs()
,
read_transfac()
,
read_uniprobe()
hocomoco <- system.file("extdata", "hocomoco.txt", package = "universalmotif") hocomoco <- read_matrix(hocomoco, headers = ">", positions = "rows")