plotCNProfile {seqCNA} | R Documentation |
SeqCNAInfo-class
object.
The plotted elements depend on the processing applied on the SeqCNAInfo-class
object.
plotCNProfile(rco, folder = NULL)
rco |
A |
folder |
Path to the folder where the plots with the output from the |
Nothing is returned from this function. Check the folder
folder for a file called seqnorm_out.jpg
.
David Mosen-Ansorena
data(seqsumm_HCC1143) rco = readSeqsumm(tumour.data=seqsumm_HCC1143) rco = applyFilters(rco, 0, 1, 0, 2, FALSE, plots=FALSE) rco = runSeqnorm(rco, plots=FALSE) rco = runGLAD(rco) rco = applyThresholds(rco, seq(-0.9,4,by=0.9), 1) plotCNProfile(rco)