cxds_getTopPairs {scds}R Documentation

Extract top-scoring gene pairs from an SingleCellExperiment where cxds has been run

Description

Extract top-scoring gene pairs from an SingleCellExperiment where cxds has been run

Usage

cxds_getTopPairs(sce, n = 100)

Arguments

sce

single cell experiment to analyze; needs "counts" in assays slot.

n

integer. The number of gene pairs to extract. Default: 100

Value

matrix Matrix with two colulmns, each containing gene indexes for gene pairs (rows).


[Package scds version 1.4.0 Index]