defunct {scater} | R Documentation |
Functions that have passed on to the function afterlife. Their successors are also listed.
calculateQCMetrics(...) ## S4 method for signature 'SingleCellExperiment' normalize(object, ...) centreSizeFactors(...)
object, ... |
Ignored arguments. |
calculateQCMetrics
is succeeded by perCellQCMetrics
and perFeatureQCMetrics
.
normalize
is succeeded by logNormCounts
.
centreSizeFactors
has no replacement - the SingleCellExperiment is removing support for multiple size factors, so this function is now trivial.
All functions error out with a defunct message pointing towards its descendent (if available).
Aaron Lun
try(calculateQCMetrics())