The qcmetrics package is a framework that provides simple data containers for quality metrics and support for automatic report generation. This document briefly illustrates the core data structures and then demonstrates the generation and automation of quality control reports for microarray and proteomics data.
qcmetrics 1.26.0
The full vignette is available in pdf format on the qcmetrics Bioconductor landing page at
http://www.bioconductor.org/packages/devel/bioc/vignettes/qcmetrics/inst/doc/qcmetrics.pdf
## R version 4.0.0 (2020-04-24)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows Server 2012 R2 x64 (build 9600)
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## Matrix products: default
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## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
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## other attached packages:
## [1] BiocStyle_2.16.0
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## loaded via a namespace (and not attached):
## [1] BiocManager_1.30.10 compiler_4.0.0 magrittr_1.5
## [4] bookdown_0.18 htmltools_0.4.0 tools_4.0.0
## [7] yaml_2.2.1 Rcpp_1.0.4.6 stringi_1.4.6
## [10] rmarkdown_2.1 knitr_1.28 stringr_1.4.0
## [13] digest_0.6.25 xfun_0.13 rlang_0.4.5
## [16] evaluate_0.14