plot_overrep_reads {qckitfastq}R Documentation

Plot the top 5 seqeunces

Description

Plot the top 5 seqeunces

Usage

plot_overrep_reads(overrep_reads, output_file = NA)

Arguments

overrep_reads

the table that sorts the sequence content and corresponding counts in descending order

output_file

File to save plot to. Will not write to file if NA. Default NA.

Value

plot of the top 5 overrepresented sequences

Examples


infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
overrep_df <- overrep_reads(infile)
plot_overrep_reads(overrep_df)


[Package qckitfastq version 1.4.0 Index]