plot_per_base_quality {qckitfastq}R Documentation

Generate a boxplot of the per position quality score.

Description

Generate a boxplot of the per position quality score.

Usage

plot_per_base_quality(per_base_quality, output_file = NA)

Arguments

per_base_quality

a data frame of the mean, median and quantiles of sequence quality per base. Most likely generated with the 'per_base_quality' function.

output_file

File to save plot to. Will not write to file if NA. Default NA.

Value

A boxplot of per position quality score distribution.

Examples


pbq <- per_base_quality(system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq"))
plot_per_base_quality(pbq)

[Package qckitfastq version 1.4.0 Index]