read_content {qckitfastq}R Documentation

Compute nucleotide content per position. Wrapper function around seqTools.

Description

Compute nucleotide content per position. Wrapper function around seqTools.

Usage

read_content(fseq, output_file = NA)

Arguments

fseq

a seqTools::fastqq object

output_file

File to write results in CSV format to. Will not write to file if NA. Default NA.

Value

Data frame of nucleotide sequence content per position

Examples

infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_content(fseq)

[Package qckitfastq version 1.4.0 Index]