plot_read_content {qckitfastq}R Documentation

Plot the per position nucleotide content.

Description

Plot the per position nucleotide content.

Usage

plot_read_content(read_content, output_file = NA)

Arguments

read_content

Data frame produced by read_content function.

output_file

File to save plot to. Will not write to file if NA. Default NA.

Value

ggplot line plot of all nucleotide content inclding A, T, G, C and N

Examples

infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_content <- read_content(fseq)
plot_read_content(read_content)

[Package qckitfastq version 1.4.0 Index]