mapNamedRangesToSets {netDx} | R Documentation |
Map named ranges to corresponding set of named ranges
mapNamedRangesToSets(gr, rangeList, verbose = FALSE)
gr |
(GRanges) named ranged to be grouped |
rangeList |
(list) sets of range names |
verbose |
(logical) print detailed messages |
Example application is when we have named ranges each corresponding to genes or regulatory elements, and we wish to group these ranges based on metabolic pathway.
RangeList. keys are names of rangeList
, values are GRanges
data(genes,pathwayList); gene_GR<-GenomicRanges::GRanges(genes$chrom, IRanges::IRanges(genes$txStart,genes$txEnd), name=genes$name2) path_GRList <- mapNamedRangesToSets(gene_GR,pathwayList)