writeQueryFile {netDx} | R Documentation |
Wrapper to write GeneMANIA query file
writeQueryFile(qSamps, incNets = "all", numReturn = 1L, outFile, orgName = "predictor")
qSamps |
(char) vector of patient IDs in query |
incNets |
(char) vector of networks to include in this analysis (features/pathway names). Useful for subset-based feature selection |
numReturn |
(integer) number of patients to return in ranking file |
outFile |
(char) path to output file |
orgName |
(char) organism name |
No value. Side effect of writing the query file to
outFile
data(pheno) writeQueryFile(pheno$ID[seq_len(5)], 'all',nrow(pheno), 'myquery.txt')