mapNamedRangesToSets {netDx}R Documentation

Map named ranges to corresponding set of named ranges

Description

Map named ranges to corresponding set of named ranges

Usage

mapNamedRangesToSets(gr, rangeList, verbose = FALSE)

Arguments

gr

(GRanges) named ranged to be grouped

rangeList

(list) sets of range names

verbose

(logical) print detailed messages

Details

Example application is when we have named ranges each corresponding to genes or regulatory elements, and we wish to group these ranges based on metabolic pathway.

Value

RangeList. keys are names of rangeList, values are GRanges

Examples

data(genes,pathwayList); 
gene_GR<-GenomicRanges::GRanges(genes$chrom,
  IRanges::IRanges(genes$txStart,genes$txEnd),
		name=genes$name2)
path_GRList <- mapNamedRangesToSets(gene_GR,pathwayList)

[Package netDx version 1.0.3 Index]