makeMergedSVData {nanotatoR}R Documentation

Merges Solo SV files to one common SV file

Description

Merges Solo SV files to one common SV file

Usage

makeMergedSVData(path, pattern, outpath, fname, dbOutput = c("dataframe",
  "text"))

Arguments

path

character. Path to the solo files.

pattern

character. file name pattern for solo files.

outpath

character. path for output file if dbOutput = text.

fname

character. filename if dbOutput = text.

dbOutput

character. Output type. Default text and dataframe.

Value

Text file containing all the solo SMAP files.

Examples

path <- system.file("extdata", "SoloFile/", package = "nanotatoR")
pattern <- "_hg19.smap"
mergedFiles <- makeMergedSVData(path = path, pattern = pattern, 
dbOutput = "dataframe")
mergedFiles[1,]

[Package nanotatoR version 1.4.0 Index]