newMgDb {metagenomeFeatures} | R Documentation |
MgDb
newMgDb(db_file, tree, metadata)
db_file |
SQLite filename with database taxonomy and sequence data |
tree |
newick filename with database tree data |
metadata |
list with database metadata |
MbDb class object
metadata_file <- system.file("extdata", 'gg13.8_85_metadata.RData', package = "metagenomeFeatures") load(metadata_file) gg_db_file <- system.file("extdata", 'gg13.8_85.sqlite', package = "metagenomeFeatures") gg_tree_file <- system.file("extdata", "gg13.8_85.tre", package = "metagenomeFeatures") ## Creating a new MgDb class object with gg13.8_85 data newMgDb(db_file = gg_db_file, tree = gg_tree_file, metadata = metadata)