diffQCplots {icetea}R Documentation

Make DESeq2 or edgeR QC plots

Description

Make DESeq2 or edgeR QC plots

Usage

diffQCplots(method, fit, y, designMat)

Arguments

method

one of "DESeq2" or "edgeR"

fit

output of fitDiffTSS (if method = "edgeR")

y

output of fitDiffTSS (if method = "DESeq2")

designMat

design matrix (data frame)

Value

Sparsity, dispersion and PCA plot (if method = DESeq2), BCV, dispersion and MDS plot (if method = "edgeR")


[Package icetea version 1.6.1 Index]