dynRangePlot {erccdashboard} | R Documentation |
Produce signal-abundance plot to evaluate dynamic range
dynRangePlot(exDat, allPoints, labelReps)
exDat |
list, contains input data and stores analysis results |
allPoints |
boolean, default is false, means of replicates will be plotted. If true then all replicates will be plotted as individual points. |
labelReps |
boolean, default is false. If true then replicates will be labeled. |
data(SEQC.Example) exDat <- initDat(datType="count", isNorm=FALSE, exTable=MET.CTL.countDat, filenameRoot="testRun", sample1Name="MET", sample2Name="CTL", erccmix="RatioPair", erccdilution=1/100, spikeVol=1, totalRNAmass=0.500, choseFDR=0.1) exDat <- est_r_m(exDat) exDat <- dynRangePlot(exDat, allPoints="FALSE", labelReps ="FALSE") exDat$Figures$dynRangePlot