GenerateData {epiNEM} | R Documentation |
Given a model created from CreateTopology and ExtendTopology, this function creeates acorresponding artificial data matrix, which is used as a ground truth for simulation studies.
GenerateData(model, extTopology, FPrate, FNrate, replicates)
model |
model of a topology from CreateTopology |
extTopology |
extended topology |
FPrate |
false positive rate |
FNrate |
false negative rate |
replicates |
number of replicates |
data matrix with effect reporters as rows and knock-downs (including double kock-downs) as columns.
Madeline Diekmann
CreateTopology
topology <- CreateTopology(3, 1, force = TRUE) topology <- unlist(unique(topology), recursive = FALSE) extTopology <- ExtendTopology(topology$model, 100) sortedData <- GenerateData(topology$model, extTopology, 0.05, 0.13, 3)