addScheme {dagLogo} | R Documentation |
Add a custom coloring or grouping scheme for ungrouped or grouped amino acids as desired.
addScheme( color = vector("character"), symbol = vector("character"), group = NULL )
color |
A named vector of character. This vector specifies different colors for visualizing the different amino acids or amino acid groups. |
symbol |
A named vector of character. This vector specifies the different symbols for visualizing the different amino acids or amino acid groups. |
group |
A list or NULL. If only coloring amino acids of similar property is
desired, set |
Add the custom coloring or grouping scheme to the environment
cacheEnv
.
## Add a grouping scheme based on the BLOSUM50 level 3 color = c(LVIMC = "#33FF00", AGSTP = "#CCFF00", FYW = '#00FF66', EDNQKRH = "#FF0066") symbol = c(LVIMC = "L", AGSTP = "A", FYW = "F", EDNQKRH = "E") group = list( LVIMC = c("L", "V", "I", "M", "C"), AGSTP = c("A", "G", "S", "T", "P"), FYW = c("F", "Y", "W"), EDNQKRH = c("E", "D", "N", "Q", "K", "R", "H")) addScheme(color = color, symbol = symbol, group = group)