prepareProteome {dagLogo} | R Documentation |
prepare proteome from UniProt webserver or a fasta file
prepareProteome(source, fasta, species = "unknown", ...)
source |
An object of |
fasta |
fasta file name or an object of AAStringSet |
species |
an character to assign the species of the proteome |
... |
parameters could be passed to prepareProteomeByFTP. |
an object of Proteome which contain protein sequence information.
Jianhong Ou
formatSequence
, buildBackgroundModel
if(interactive()){ library(UniProt.ws) availableUniprotSpecies("Drosophila melanogaster") UniProt.ws <- UniProt.ws(taxId=7227) proteome <- prepareProteome(UniProt.ws, species="Drosophila melanogaster") }