get_fusion_by_gene_name {chimeraviz} | R Documentation |
Helper function to retrieve the Fusion objects that has geneName as one of the partner genes.
get_fusion_by_gene_name(fusion_list, gene_name)
fusion_list |
A list of Fusion objects. |
gene_name |
The gene name we're looking for. |
Note: get_fusion_by_gene_name(fusionList, "MT") will match both MT-ND5 and MT-ND4.
A list of Fusion objects.
defuse833ke <- system.file( "extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- import_defuse(defuse833ke, "hg19", 1) length(get_fusion_by_gene_name(fusions, "RCC1")) # [1] 1