get_fusion_by_id {chimeraviz} | R Documentation |
Helper function to retrieve the Fusion object with the given id.
get_fusion_by_id(fusion_list, id)
fusion_list |
A list of Fusion objects. |
id |
The id (e.g. the cluster_id from a deFuse run) we're looking for. |
A Fusion object.
defuse833ke <- system.file( "extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- import_defuse(defuse833ke, "hg19", 1) fusion <- get_fusion_by_id(fusions, 5267) # This should be the Fusion object: fusion # [1] "Fusion object" # [1] "id: 5267" # [1] "Fusion tool: defuse" # [1] "Genome version: hg19" # [1] "Gene names: RCC1-HENMT1" # [1] "Chromosomes: chr1-chr1" # [1] "Strands: +,-"