plotBioNetPoints {caOmicsV} | R Documentation |
Point plot on caOmicsv bioNetCircos layout. This method plots one track of points for every node. bioNetCircos layout and graphic device must be initialized first.
plotBioNetPoints(dataValues, maxValue=NULL, minValue=NULL, outer, inner, plotColors=rep("black", ncol(dataValues)), sizeByValue=FALSE, pch=".")
dataValues |
numeric matrix of plot data |
maxValue |
numeric, the biggest value of plot data |
minValue |
numeric, the smallest value of plot data |
outer |
non-negative numeric, the outer boundary of plot area from node center |
inner |
non-negative numeric, the inner boundary of plot area from node center |
plotColors |
character vector or vector of R color specification, colors for each sample |
sizeByValue |
logic, if true, the data value will be used for point size |
pch |
character for point type, same as the one in par() |
None
Henry Zhang
data(bionetPlotDemoData) expr <- bionetPlotDemoData$heatmapData[[1]] bioNet <- bc3net(expr) initializeBioNetCircos(bioNet, totalSamples=60) showBioNetNodesLayout() plotBioNetPoints(expr, outer=3, inner=2)