AntiProfile-class {antiProfiles} | R Documentation |
This class encapsulates anti-profiles. Objects of this
class should be built from
AntiProfileStats
objects using the
buildAntiProfile
method. Anti-profile
scores can be computed for new samples using the
apCount
method.
## Accessors getProbesetIds(object) getNormalRegions(object)
object |
Object of class (or inheriting from)
|
In the following code object
is a
AntiProfile
object.
getProbesetIds
:vector of Affymetrix ids for probesets included in the anti-profile (character)
getNormalRegions
:median and upper boundary of normal expression regions (numeric matrix of dimension s-by-2, where s is the size of the anti-profile)
Hector Corrada Bravo hcorrada@gmail.com
AntiProfileStats
for the class of
objects from which anti-profiles are built.
buildAntiProfile for the method used to
construct objects of this class. apCount
for the function used to calculate anti-profile scores
from objects of this class.
if (require(antiProfilesData)) { data(apColonData) colonStats=apStats(exprs(apColonData), pData(apColonData)$Status) colonAP = buildAntiProfile(colonStats, tissueSpec=FALSE, sigsize=10) show(colonAP) head(getProbesetIds(colonAP)) head(getNormalRegions(colonAP)) }