constructRcadeTable {Rcade} | R Documentation |
Most Rcade users will not need to call this function directly. This function constructs a full Rcade table from ChIP and DE data.
constructRcadeTable(DE, DElookup, chip, annoZone, annoZoneGeneidName, DE.prior=NULL, ChIP.prior=NULL, prior.mode, prior=NULL)
DE |
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DElookup |
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chip |
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annoZone |
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annoZoneGeneidName |
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DE.prior |
As per |
ChIP.prior |
As per |
prior.mode |
As per |
prior |
As per |
data.frame
Jonathan Cairns
data(RcadeSTAT1) dir <- file.path(system.file("extdata", package="Rcade"), "STAT1") DE <- getDE(RcadeSTAT1) DElookup <- list(GeneID="ENSG", logFC="logFC", B="B", "Genes.Location", "Symbol") chip <- getChIP(RcadeSTAT1) annoZone <- getChIP(RcadeSTAT1, what="annoZones") x <- constructRcadeTable(DE, DElookup, chip, annoZone, annoZoneGeneidName="ENSG", prior.mode="assumeIndependent")