GOTermList {PloGO2}R Documentation

Function to extract a list of GO terms at level 2,3 or 4 of the GO hierarchy

Description

At the moment a quick and dirty way to extract all GO nodes at levels 2, 3 or 4 of the GO hierarchy.

Usage

GOTermList(ontology = "BP", level = 2, node = NULL)

Arguments

ontology

Either "BP", "CC" or "MF"

level

Either 2, 3 or 4

node

Null or a GO node

Details

This is a quick and dirty way to extract a list of GO terms of interest. That can be one of the levels 2, 3 or 4 or all subnodes (children) of a particular node if a valid GO is provided for the node parameter. Should be rewritten.

Value

A vector of GO nodes

Author(s)

D. Pascovici

Examples


GOTermList("BP", 2)
GOTermList("CC", 2)



[Package PloGO2 version 1.0.0 Index]